PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.243990.1
Common NameCsa_3G049440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 197aa    MW: 21801.1 Da    PI: 5.2564
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.243990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB165.19.3e-5253147195
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqd+++P+anv+rimk++lP++akis+d+ket+qecvse+isf+tsea+++c+re+rkt++++d+lwa+++lGf++y+epl+v+l++yre e+
  Cucsa.243990.1  53 VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES 147
                     69******************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-4947150IPR009072Histone-fold
SuperFamilySSF471135.32E-3656151IPR009072Histone-fold
PfamPF008081.0E-2459123IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-1787105No hitNo description
PROSITE patternPS00685090106IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-17106124No hitNo description
PRINTSPR006153.4E-17125143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLTPNNPTSI NSNPNTNQHL SNGGTSIGNS SATSPLSVAA TANNNEQNQQ CMVREQDQYM  60
PMANVIRIMK RILPSHAKIS DDTKETIQEC VSEYISFITS EANERCHREQ RKTVTAEDVL  120
WAMGKLGFDN YIEPLTVFLN RYRESESIRT EPMLRRNVDY GAQVGMISPY GQAFQIGQVP  180
AGMFDAMGGY YGGGGSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4054144393NF-YB
4awl_B1e-4054144494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4054144494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449191.11e-123PREDICTED: nuclear transcription factor Y subunit B-9
SwissprotQ9SFD85e-63NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A0A0L2U11e-144A0A0A0L2U1_CUCSA; Uncharacterized protein
STRINGVIT_00s0956g00020.t016e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.13e-61NF-YB family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]